Я могу установить опции Truecrypt от терминала?

Согласно truecrypt -h :

-m, --mount-options=OPTION1[,OPTION2,OPTION3,...]
 Specifies comma-separated mount options for a TrueCrypt volume:
  headerbak: Use backup headers when mounting a volume.
  nokernelcrypto: Do not use kernel cryptographic services.
  readonly|ro: Mount volume as read-only.
  system: Mount partition using system encryption.
  timestamp|ts: Do not restore host-file modification timestamp when a volume
   is dismounted (note that the operating system under certain circumstances
   does not alter host-file timestamps, which may be mistakenly interpreted
   to mean that this option does not work).
 See also option --fs-options.

Итак, попробуйте следующее:

truecrypt -t -m=nokernelcrypto volume mountpoint